Molecular identification and distribution of non-tuberculous mycobacteria isolated from clinical specimens by PCR-sequencing method in West of Iran


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نویسندگان: پرویز مهاجری , سارا آتشی

کلمات کلیدی: clinical samples; molecular identification; non-tuberculous mycobacteria; polymerase chain reaction

نشریه: Clinical Respiratory Journal , 3 , 12 ,

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کد مقاله 10622
عنوان فارسی مقاله
عنوان لاتین مقاله Molecular identification and distribution of non-tuberculous mycobacteria isolated from clinical specimens by PCR-sequencing method in West of Iran
نوع مقاله مقاله اصیل (پژوهشی، Original)
بالاترین نمایه نامه بین‌المللی ISI
سطح مقاله هیچکدام
IF 2.356
عنوان نشریه Clinical Respiratory Journal
نوع نشریه خارجی ایندکس شده
شماره نشریه 3
دوره 12
تاریخ انتشار شمسی 1396/12/10
تاریخ انتشار میلادی
آدرس لینک مقاله/ همایش در شبکه اینترنت http://onlinelibrary.wiley.com/doi/10.1111/crj.12617/abstract;jsessionid=FF75BF0D4B7E023C22DD61E1A6B4A9D2.f03t02
DOI
آدرس علمی (Affiliation) نویسنده متقاضی Department of Microbiology, Faculty of Medicine, Kermanshah University of Medical Sciences

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BACKGROUND AND AIMS: Infections by non-tuberculous mycobacteria (NTM) has rapidly increased in recent years, due to high infection rates related to the populations at risk like immunocompromised individuals, patients predisposed by prior pulmonary. The aim of this study was to investigate the presence of NTM in clinical samples and genetic diversity using 16S rRNA and rpoB sequence analysis. METHODS: A cross-sectional study was conducted on 45 diverse isolates collected from sputum in 2 years 2014-2015 using standard decontamination procedure. All mycobacterial isolates were grown on LJ medium and also conventional tests for preliminary identification of mycobacteria rely on traits and then DNA extraction. PCR was performed, and sequencing of 16S rRNA and rpoB genes was applied for NTM strains identification. RESULTS: A total of 45 isolates collected, 37 samples (83%) were evaluated as NTM. All NTM strains using molecular methods by sequencing 16S rRNA and rpoB gene were identified, by this way 12 different species have been identified which sequencing of rpoB was able to identify all species. The major species obtained were Mycobacterium simiae (22%), M. fortuitum (19%), and M. abscessus (13%). CONCLUSIONS: The results of our study showed that the patients were infected by a wide range of atypical mycobacteria. It was concluded that 16S rRNA gene sequencing coupled with rpoB marker is a high discriminatory power in identification of NTM. The presence of various species in clinical samples in Iran emphasizes the use of molecular method like sequence analysis of genes is necessary for reliable identification

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نویسنده نفر چندم مقاله نویسنده مسئول
پرویز مهاجریپنجمبلي
سارا آتشیچهارمخير

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نام فایل تاریخ درج فایل اندازه فایل دانلود
Dastranj-2018.pdf1397/01/14478106دانلود